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  • Sarah Auburn
2020

Genetic diversity and neutral selection in Plasmodium vivax erythrocyte binding protein correlates with patient antigenicity

Han, J. H., Cho, J. S., Ong, J. J. Y., Park, J. H., Nyunt, M. H., Sutanto, E., Trimarsanto, H., Petros, B., Aseffa, A., Getachew, S., Sriprawat, K., Anstey, N. M., Grigg, M. J., Barber, B. E., William, T., Qi, G., Liu, Y., Pearson, R. D., Auburn, S., Price, R. N. & 4 others, Nosten, F., Rénia, L., Russell, B. & Han, E. T., 9 Jul 2020, In : PLoS Neglected Tropical Diseases. 14, 7, p. 1-16 16 p., e0008202.

Research output: Contribution to journalArticle

Open Access
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Implementing parasite genotyping into national surveillance frameworks: feedback from control programs and researchers in the Asia-Pacific region

Noviyanti, R., Miotto, O., Barry, A. E., Marfurt, J., Siegel, S., Thuy-Nhien, N., Quang, H. H., Anggraeni, N. D., Laihad, F., Liu, Y., Sumiwi, M. E., Trimarsanto, H., Coutrier, F., Fadila, N., Ghanchi, N., Johora, F. T., Puspitasari, A. M., Tavul, L., Trianty, L., Utami, R. A. S. & 4 others, Duoquan, W., Wangchuck, K., Price, R. & Auburn, S., 27 Jul 2020, In : Malaria Journal. 19, p. 1-20 20 p., 271.

Research output: Contribution to journalArticle

Open Access
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Implementing parasite genotyping into national surveillance frameworks: feedback from control programmes and researchers in the Asia-Pacific region

Noviyanti, R., Miotto, O., Barry, A., Marfurt, J., Siegel, S., Thuy-Nhien, N., Quang, H. H., Anggraeni, N. D., Laihad, F., Liu, Y., Sumiwi, M. E., Trimarsanto, H., Coutrier, F., Fadila, N., Ghanchi, N., Johora, F. T., Puspitasari, A. M., Tavul, L., Trianty, L., Utami, R. A. S. & 4 others, Wang, D., Wangchuck, K., Price, R. N. & Auburn, S., 27 Jul 2020, In : Malaria Journal. 19, 1, p. 1-20 20 p., 271.

Research output: Contribution to journalArticle

Open Access
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Molecular surveillance over 14 years confirms reduction of Plasmodium vivax and falciparum transmission after implementation of Artemisinin-based combination therapy in Papua, Indonesia

Pava, Z., Puspitasari, A. M., Rumaseb, A., Handayuni, I., Trianty, L., Utami, R. A. S., Tirta, Y. K., Burdam, F., Kenangalem, E., Wirjanata, G., Kho, S., Trimarsanto, H., Anstey, N. M., Poespoprodjo, J. R., Noviyanti, R., Price, R. N., Marfurt, J. & Auburn, S., 1 May 2020, In : PLoS Neglected Tropical Diseases. 14, 5, p. 1-16 16 p., e0008295.

Research output: Contribution to journalArticle

Open Access
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2019

Genomic Analysis of Plasmodium vivax in Southern Ethiopia Reveals Selective Pressures in Multiple Parasite Mechanisms

Auburn, S., Getachew, S., Pearson, R. D., Amato, R., Miotto, O., Trimarsanto, H., Zhu, S. J., Rumaseb, A., Marfurt, J., Noviyanti, R., Grigg, M. J., Barber, B., William, T., Goncalves, S. M., Drury, E., Sriprawat, K., Anstey, N. M., Nosten, F., Petros, B., Aseffa, A. & 3 others, McVean, G., Kwiatkowski, D. P. & Price, R. N., 1 Dec 2019, In : Journal of Infectious Diseases. 220, 11, p. 1738-1749 12 p.

Research output: Contribution to journalArticle

Open Access

Short-course primaquine for the radical cure of Plasmodium vivax malaria: a multicentre, randomised, placebo-controlled non-inferiority trial

Taylor, W. R. J., Thriemer, K., von Seidlein, L., Yuentrakul, P., Assawariyathipat, T., Assefa, A., Auburn, S., Chand, K., Chau, N. H., Cheah, P. Y., Dong, L. T., Dhorda, M., Degaga, T. S., Devine, A., Ekawati, L. L., Fahmi, F., Hailu, A., Hasanzai, M. A., Hien, T. T., Khu, H. & 25 others, Ley, B., Lubell, Y., Marfurt, J., Mohammad, H., Moore, K. A., Naddim, M. N., Pasaribu, A. P., Pasaribu, S., Promnarate, C., Rahim, A. G., Sirithiranont, P., Solomon, H., Sudoyo, H., Sutanto, I., Thanh, N. V., Tuyet-Trinh, N. T., Waithira, N., Woyessa, A., Yamin, F. Y., Dondorp, A., Simpson, J. A., Baird, J. K., White, N. J., Day, N. P. & Price, R. N., 14 Sep 2019, In : The Lancet. 394, 10202, p. 929-938 10 p.

Research output: Contribution to journalArticle

Open Access
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Whole genome sequencing of amplified Plasmodium knowlesi DNA from unprocessed blood reveals genetic exchange events between Malaysian Peninsular and Borneo subpopulations

Benavente, E. D., Gomes, A. R., De Silva, J. R., Grigg, M., Walker, H., Barber, B. E., William, T., Yeo, T. W., de Sessions, P. F., Ramaprasad, A., Ibrahim, A., Charleston, J., Hibberd, M. L., Pain, A., Moon, R. W., Auburn, S., Ling, L. Y., Anstey, N. M., Clark, T. G. & Campino, S., 1 Dec 2019, In : Scientific Reports. 9, 1, p. 1-11 11 p., 9873.

Research output: Contribution to journalArticle

Open Access
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2018

Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics

Auburn, S., Benavente, E. D., Miotto, O., Pearson, R. D., Amato, R., Grigg, M. J., Barber, B. E., William, T., Handayuni, I., Marfurt, J., Trimarsanto, H., Noviyanti, R., Sriprawat, K., Nosten, F., Campino, S., Clark, T. G., Anstey, N. M., Kwiatkowski, D. P. & Price, R. N., 3 Jul 2018, In : Nature Communications. 9, 1, p. 1-12 12 p., 2585.

Research output: Contribution to journalArticle

Open Access
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Plasmodium falciparum artemisinin resistance monitoring in Sabah, Malaysia: In vivo therapeutic efficacy and kelch13 molecular marker surveillance

Grigg, M. J., William, T., Piera, K. A., Rajahram, G. S., Jelip, J., Aziz, A., Menon, J., Marfurt, J., Price, R. N., Auburn, S., Barber, B. E., Yeo, T. W. & Anstey, N. M., 10 Dec 2018, In : Malaria Journal. 17, 1, p. 1-8 8 p., 463.

Research output: Contribution to journalArticle

Open Access
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2017

Challenges for achieving safe and effective radical cure of Plasmodium vivax: a round table discussion of the APMEN Vivax Working Group

Thriemer, K., Ley, B., Bobogare, A. B., Dysoley, L., Alam, M. S., Pasaribu, A. P., Sattabongkot-Prachumsri, J. S. P., Jambert, E., Domingo, G. J., Commons, R., Auburn, S., Marfurt, J., Devine, A., Aktaruzzaman, M. M., Sohel, N., Namgay, R. N., Drukpa, T., Sharma, S. N., Sarawati, E., Samad, I. & 47 others, Theodora, M., Nambanya, S., Ounekham, S., Mudin, R. N. B., Da Thakur, G., Makita, L. S., Deray, R., Lee, S. E., Boaz, L., Danansuriya, M. N., Mudiyanselage, S. D., Chinanonwait, N., Kitchakarn, S., Nausien, J., Naket, E., Duc, T. N., Do Manh, H., Hong, Y. S., Cheng, Q., Richards, J. S., Kusriastuti, R., Satyagraha, A. W., Noviyanti, R., Ding, X. C., Khan, W. A., Swe Phru, C., Guoding, Z., Qi, G., Kaneko, A., Miotto, O., Nguitragool, W., Roobsoong, W., Battle, K., Howes, R. E., Roca-Feltrer, A., Duparc, S., Bhowmick, I. P., Kenangalem, E., Bibit, J. A., Barry, A. E., Sintasath, D., Abeyasinghe, R., Sibley, C. H., McCarthy, J., Von Seidlein, L., Baird, J. K. & Price, R. N., 5 Apr 2017, In : Malaria Journal. 16, 141, p. 1-9 9 p., 141.

Research output: Contribution to journalMeeting Abstract

Open Access
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Chloroquine efficacy for Plasmodium vivax in Myanmar in populations with high genetic diversity and moderate parasite gene flow

Htun, M. W., Mon, N. C. N., Aye, K. M., Hlaing, C. M., Kyaw, M. P., Handayuni, I., Trimarsanto, H., Bustos, D., Ringwald, P., Price, R. N., Auburn, S. & Thriemer, K., 10 Jul 2017, In : Malaria Journal. 16, p. 1-13 13 p., 281.

Research output: Contribution to journalArticle

Open Access
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Comparison of artemether-lumefantrine and chloroquine with and without primaquine for the treatment of Plasmodium vivax infection in Ethiopia: A randomized controlled trial

Abreha, T., Hwang, J., Thriemer, K., Tadesse, Y., Girma, S., Melaku, Z., Assef, A., Kassa, M., Chatfield, M. D., Landman, K. Z., Chenet, S. M., Lucchi, N. W., Udhayakumar, V., Zhou, Z., Shi, Y. P., Kachur, S. P., Jima, D., Kebede, A., Solomon, H., Mekasha, A. & 7 others, Alemayehu, B. H., Malone, J. L., Dissanayake, G., Teka, H., Auburn, S., von Seidlein, L. & Price, R. N., 16 May 2017, In : PLoS Medicine. 14, 5, p. 1-17 17 p., e1002299.

Research output: Contribution to journalArticle

Open Access
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Dissecting malaria biology and epidemiology using population genetics and genomics

Auburn, S. & Barry, A. E., Feb 2017, In : International Journal for Parasitology. 47, 2-3, p. 77-85 9 p.

Research output: Contribution to journalReview article

Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections

Pava, Z., Noviyanti, R., Handayuni, I., Trimarsanto, H., Trianty, L., Burdam, F. H., Kenangalem, E., Utami, R. A. S., Tirta, Y. K., Coutrier, F., Poespoprodjo, J. R., Price, R. N., Marfurt, J. & Auburn, S., 1 May 2017, In : PLoS One. 12, 5, p. 1-13 13 p., e0177445.

Research output: Contribution to journalArticle

Open Access
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Genomic characterization of recrudescent plasmodium malariae after treatment with artemether/lumefantrine

Rutledge, G. G., Marr, I., Huang, G. K. L., Auburn, S., Marfurt, J., Sanders, M., White, N. J., Berriman, M., Newbold, C. I., Anstey, N. M., Otto, T. D. & Price, R. N., 1 Aug 2017, In : Emerging Infectious Diseases. 23, 8, p. 1300-1307 8 p.

Research output: Contribution to journalReview article

Open Access
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Molecular analysis demonstrates high prevalence of chloroquine resistance but no evidence of artemisinin resistance in Plasmodium falciparum in the Chittagong Hill Tracts of Bangladesh

Alam, M. S., Ley, B., Nima, M. K., Johora, F. T., Hossain, M. E., Thriemer, K., Auburn, S., Marfurt, J., Price, R. N. & Khan, W. A., 15 Aug 2017, In : Malaria Journal. 16, p. 1-6 6 p., 335.

Research output: Contribution to journalArticle

Open Access
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Passively versus actively detected malaria: Similar genetic diversity but different complexity of infection

Pava, Z., Handayuni, I., Trianty, L., Utami, R. A. S., Tirta, Y. K., Puspitasari, A. M., Burdam, F., Kenangalem, E., Wirjanata, G., Kho, S., Trimarsanto, H., Anstey, N., Poespoprodjo, J. R., Noviyanti, R., Price, R. N., Marfurt, J. & Auburn, S., Dec 2017, In : American Journal of Tropical Medicine and Hygiene. 97, 6, p. 1788-1796 9 p.

Research output: Contribution to journalArticle

Open Access
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Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution

Rutledge, G. G., Bohme, U., Sanders, M., Reid, A., Cotton, J. A., Maiga-Ascofare, O., Djimde, A., Apinjoh, T. O., Amenga-Etego, L., Manske, M., Barnwell, J., Renaud, F., Ollomo, B., Prugnolle, F., Anstey, N., Auburn, S., Price, R., McCarthy, J., Kwiatkowski, D., Newbold, C. & 2 others, Berriman, M. & Otto, T., 2017, In : Nature. 542, 7639, p. 101-104 4 p.

Research output: Contribution to journalLetter

Open Access

VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax Populations

Trimarsanto, H., Benavente, E. D., Noviyanti, R., Utami, R. A. S., Trianty, L., Pava, Z., Getachew, S., Kim, J-Y., Goo, Y-K., Wangchuck, S., Liu, Y., Gao, Q., Dowd, S., Cheng, Q., Clark, T. G., Price, R. N. & Auburn, S., 31 Mar 2017, In : PLoS Neglected Tropical Diseases. 11, 3, p. 1-12 12 p., e0005465.

Research output: Contribution to journalArticle

Open Access
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2016

Admixture into and within sub-Saharan Africa

Busby, G. B. J., Band, G., Le, Q. S., Jallow, M., Bougama, E., Mangano, V. D., Amenga-Etego, L. N., Enimil, A., Apinjoh, T. O., Ndila, C. M., Manjurano, A., Nyirongo, V., Doumba, O., Rockett, K. A., Kwiatkowski, D. P., Spencer, C. C. A., Vanderwal, A., Elzein, A., Nyika, A., Mendy, A. & 231 others, Miles, A., Diss, A., Kerasidou, A., Green, A., Jeffreys, A. E., MacInnis, B., Hughes, C., Moyes, C., Hubbart, C., Malangone, C., Potter, C., Mead, D., Barnwell, D., Jyothi, D., Drury, E., Somaskantharajah, E., Hilton, E., Leffler, E., Maslen, G., Busby, G., Clarke, G. M., Ragoussis, I., Garcia, J. A., Rogers, J., deVries, J., Shelton, J. M. G., Ragoussis, J., Stalker, J., Rodford, J., O'Brien, J., Evans, J., Rowlands, K., Cook, K., Fitzpatrick, K., Kivinen, K., Small, K., Johnson, K. J., Hart, L., Manske, M., McCreight, M., Stevens, M., Pirinen, M., Hennsman, M., Parker, M., SanJoaquin, M., Seplúveda, N., Cook, O., Miotto, O., Deloukas, P., Craik, R., Wrigley, R., Watson, R., Pearson, R. D., Hutton, R., Oyola, S., Auburn, S., Shah, S., Le, S. Q., Molloy, S., Bull, S., Campino, S., Clark, T. G., Ruano-Rubio, V., Cornelius, V., Teo, Y. Y., Corran, P., Silva, N., Risley, P., Doyle, A., Evans, J., Horstmann, R., Plowe, C., Duffy, P., Carucci, D., Gottleib, M., Tall, A., Ly, A. B., Dolo, A., Sakuntabhai, A., Puijalon, O., Bah, A., Camara, A., Sadiq, A., Abie Khan, A., Jobarteh, A., Mendy, A., Ebonyi, A., Danso, B., Taal, B., Casals-Pascual, C., Conway, D. J., Onykwelu, E., Sisay-Joof, F., Sirugo, G., Kanyi, H., Njie, H., Obu, H., Saine, H., Sambou, I., Abubakar, I., Njie, J., Jaiteh, J., Bojang, K. A., Jammeh, K., Sabally-Ceesay, K., Manneh, L., Camara, L., Yamoah, L., Njie, M., Pinder, M., Jallow, M., Aiyegbo, M., Jasseh, M., Keita, M. L., Saidy-Khan, M., Ceesay, N., Rasheed, O., Ceesay, P. L., Esangbedo, P., Cole-Ceesay, R., Olaosebikan, R., Correa, S., Njie, S., Usen, S., Dibba, Y., Barry, A., Djimdé, A., Sall, A. H., Abathina, A., Niangaly, A., Dembele, A., Poudiougou, B., Diarra, E., Bamba, K., Thera, M. A., Doumbo, O., Toure, O., Konate, S., Sissoko, S., Diakite, M., Konate, A. T., Modiano, D., Bougouma, E. C., Bancone, G., Ouedraogo, I. N., Simpore, J., Sirima, S. B., Troye-Blomberg, M., Oduro, A. R., Hodgson, A. V. O., Ghansah, A., Nkrumah, F., Atuguba, F., Koram, K. A., Wilson, M. D., Ansah, N. A., Mensah, N., Ansah, P. A., Anyorigiya, T., Asoala, V., Rogers, W. O., Akoto, A. O., Ofori, A. O., Ansong, D., Sambian, D., Asafo-Agyei, E., Sylverken, J., Antwi, S., Agbenyega, T., Orimadegun, A. E., Amodu, F. A., Oni, O., Omotade, O. O., Amodu, O., Olaniyan, S., Ndi, A., Yafi, C., Achidi, E. A., Mbunwe, E., Anchang-Kimbi, J., Mugri, R., Besingi, R., Apinjoh, T. O., Titanji, V., Elhassan, A., Hussein, A., Mohamed, H., Elhassan, I., Ibrahim, M., Kokwaro, G., Oluoch, T., Macharia, A., Newton, C., Opi, D. H., Kamuya, D., Bauni, E., Marsh, K., Peshu, N., Molyneux, S., Uyoga, S., Williams, T. N., Marsh, V., Nadjm, B., Maxwell, C., Drakeley, C., Riley, E., Mtei, F., Mtove, G., Wangai, H., Reyburn, H., Joseph, S., Ishengoma, D., Lemnge, M., Mutabingwa, T., Makani, J., Cox, S., Phiri, A., Munthali, A., Kachala, D., Njiragoma, L., Molyneux, M. E., Moore, M., Ntunthama, N., Pensulo, P., Taylor, T., Carter, R., Fernando, D., Karunaweera, N., Dewasurendra, R., Suriyaphol, P. & Malaria Genomic Epidemiology Network, 21 Jun 2016, In : eLife. 5, JUN2016, p. 1-44 44 p., e15266.

Research output: Contribution to journalArticle

Open Access
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A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes

Auburn, S., Böhme, U., Steinbiss, S., Trimarsanto, H., Hostetler, J., Sanders, M., Gao, Q., Nosten, F., Newbold, C. I., Berriman, M., Price, R. N. & Otto, T. D., 15 Nov 2016, In : Wellcome Open Research. 1, 4, p. 1-12 12 p.

Research output: Contribution to journalArticle

Open Access
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Dihydrofolate-reductase mutations in plasmodium knowlesi appear unrelated to selective drug pressure from putative human-to-human transmission in Sabah, Malaysia

Grigg, M., Barber, B., Marfurt, J., Imwong, M., William, T., Bird, E., Piera, K., Aziz, A., Boonyuen, U., Drakeley, C., Cox, J., White, N. J., Cheng, Q., Yeo, T., Auburn, S. & Anstey, N., 2016, In : PLoS One. 11, 3, p. 1-19 19 p., e0149519.

Research output: Contribution to journalArticle

Open Access
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Efficacy of artesunate-mefloquine for chloroquine-resistant plasmodium vivax malaria in Malaysia: An open-label, randomized, controlled trial

Grigg, M., Williams, T., Menon, J., Barber, B., Wilkes, C., Rajahram, G., Edstein, M., Auburn, S., Price, R., Yeo, T. & Anstey, N., 1 Jun 2016, In : Clinical Infectious Diseases. 62, 11, p. 1403-1411 9 p.

Research output: Contribution to journalArticle

Open Access

Expression of Plasmodium vivax crt-o is related to parasite stage but not ex vivo chloroquine susceptibility

Pava, Z., Handayuni, I., Wirjanata, G., To, S., Trianty, L., Noviyanti, R., Poespoprodjo, J. R., Auburn, S., Price, R. & Marfurt, J., Jan 2016, In : Antimicrobial Agents and Chemotherapy. 60, 1, p. 361-367 7 p.

Research output: Contribution to journalArticle

Open Access

Further evidence of increasing diversity of Plasmodium vivax in the Republic of Korea in recent years

Kim, J-Y., Goo, Y-K., Zo, Y. G., Ji, S-Y., Trimarsanto, H., To, S., Clark, T., Price, R. & Auburn, S., 2016, In : PLoS One. 11, 3, p. 1-16 16 p., e0151514.

Research output: Contribution to journalArticle

Open Access
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G6PD deficiency and antimalarial efficacy for uncomplicated malaria in Bangladesh: A prospective observational study

Ley, B., Alam, MS., Ley-Thriemer, K., Hossain, M., Kibria, MG., Auburn, S., Poirot, E., Price, R. & Khan, W., 2016, In : PLoS One. 11, 4, p. 1-15 15 p., e0154015.

Research output: Contribution to journalArticle

Open Access
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Genomic analysis of local variation and recent evolution in Plasmodium vivax

Pearson, R. D., Amato, R., Auburn, S., Miotto, O., Almagro-Garcia, J., Amaratunga, C., Suon, S., Mao, S., Noviyanti, R., Trimarsanto, H., Marfurt, J., Anstey, N. M., WILLIAM, T., Boni, M. F., Dolecek, C., Tran, H. T., White, N. J., Michon, P., Siba, P., Tavul, L. & 24 others, Harrison, G., Barry, A. E., Mueller, I., Ferreira, M. U., Karunaweera, N., Randrianarivelojosia, M., Gao, Q., Hubbart, C., Hart, L., Jeffery, B., Drury, E., Mead, D., Kekre, M., Campino, S., Manske, M., Cornelius, V. J., MacInnis, B., Rockett, K. A., Miles, A., Rayner, J. C., Fairhurst, R. M., Nosten, F., Price, R. N. & Kwiatkowski, D. P., 1 Aug 2016, In : Nature Genetics. 48, 8, p. 959-964 6 p.

Research output: Contribution to journalArticle

Genomic Analysis Reveals a Common Breakpoint in Amplifications of the Plasmodium vivax Multidrug Resistance 1 Locus in Thailand

Auburn, S., Serre, D., Pearson, R. D., Amato, R., Sriprawat, K., To, S., Handayuni, I., Suwanarusk, R., Russell, B., Drury, E., Stalker, J., Miotto, O., Kwiatkowski, D., Nosten, F. & Price, R., 2016, In : Journal of Infectious Diseases. 214, 8, p. 1235-1242 8 p.

Research output: Contribution to journalArticle

Open Access

Genomic epidemiology of artemisinin resistant malaria

Amato, R., Miotto, O., Woodrow, C. J., Almagro-Garcia, J., Sinha, I., Campino, S., Mead, D., Drury, E., Kekre, M., Sanders, M., Amambua-Ngwa, A., Amaratunga, C., Amenga-Etego, L., Andrianaranjaka, V., Apinjoh, T., Ashley, E., Auburn, S., Awandare, G. A., Baraka, V., Barry, A. & 77 others, Boni, M. F., Borrmann, S., Bousema, T., Branch, O., Bull, P. C., Chotivanich, K., Conway, D. J., Craig, A., Day, N. P., Djimdé, A., Dolecek, C., Dondorp, A. M., Drakeley, C., Duffy, P., Echeverry, D. F., Egwang, T. G., Fairhurst, R. M., Faiz, A., Fanello, C. I., Hien, T. T., Hodgson, A., Imwong, M., Ishengoma, D., Lim, P., Lon, C., Marfurt, J., Marsh, K., Mayxay, M., Michon, P., Mobegi, V., Mokuolu, O. A., Montgomery, J., Mueller, I., Kyaw, M. P., Newton, P. N., Nosten, F., Noviyanti, R., Nzila, A., Ocholla, H., Oduro, A., Onyamboko, M., Ouedraogo, J. B., Phyo, A. P. P., Plowe, C., Price, R. N., Pukrittayakamee, S., Randrianarivelojosia, M., Ringwald, P., Ruiz, L., Saunders, D., Shayo, A., Siba, P., Takala-Harrison, S., Thanh, T. N. N., Thathy, V., Verra, F., Wendler, J., White, N. J., Ye, H., Cornelius, V. J., Giacomantonio, R., Muddyman, D., Henrichs, C., Malangone, C., Jyothi, D., Pearson, R. D., Rayner, J. C., McVean, G., Rockett, K. A., Miles, A., Vauterin, P., Jeffery, B., Manske, M., Stalker, J., Macinnis, B., Kwiatkowski, D. P. & MalariaGEN Plasmodium falciparum Community Project, 4 Mar 2016, In : eLife. 5, MARCH2016, p. 1-29 29 p., e08714.

Research output: Contribution to journalArticle

Open Access
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Molecular epidemiology of P. vivax in Iran: High diversity and complex sub-structure using neutral markers, but no evidence of Y976F mutation at pvmdr1

Hamedi, Y., Sharifi-Sarasiabi, K., Dehghan, F., Safari, R., To, S., Handayuni, I., Trimarsanto, H., Price, R. N. & Auburn, S., 1 Nov 2016, In : PLoS One. 11, 11, e0166124.

Research output: Contribution to journalArticle

Open Access
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Submicroscopic and asymptomatic plasmodium parasitaemia associated with significant risk of anaemia in Papua, Indonesia

Pava, Z., Burdam, F. H., Handayuni, I., Trianty, L., Utami, R. A. S., Tirta, Y. K., Kenangalem, E., Lampah, D., Kusuma, A., Wirjanata, G., Kho, S., Simpson, J. A., Auburn, S., Douglas, N. M., Noviyanti, R., Anstey, N. M., Poespoprodjo, J. R., Marfurt, J. & Price, R. N., 1 Oct 2016, In : PLoS One. 11, 10, e0165340.

Research output: Contribution to journalArticle

Open Access
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Transfusion-transmitted severe Plasmodium knowlesi malaria in a splenectomized patient with beta-thalassaemia major in Sabah, Malaysia: A case report

Bird, E., Parameswaran, U., Williams, T., Khoo, T., Grigg, M., Aziz, A., Marfurt, J., Yeo, T., Auburn, S., Anstey, N. & Barber, B., 2016, In : Malaria Journal. 15, 1, p. 1-6 6 p., 357.

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Where chloroquine still works: The genetic make-up and susceptibility of Plasmodium vivax to chloroquine plus primaquine in Bhutan

Wangchuk, S., Drukpa, T., Penjor, K., Peldon, T., Dorjey, Y., Dorji, K., Chhetri, V., Trimarsanto, H., To, S., Murphy, A., von Seidlein, L., Price, R., Ley-Thriemer, K. & Auburn, S., 2016, In : Malaria Journal. 15, 1, p. 1-11 11 p., 277.

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2015

A novel locus of resistance to severe malaria in a region of ancient balancing selection

Band, G., Rockett, K. A., Spencer, C. C. A., Kwiatkowski, D. P., Si Le, Q., Clarke, G. M., Kivinen, K., Leffler, E. M., Cornelius, V., Conway, D. J., Williams, T. N., Taylor, T., Bojang, K. A., Doumbo, O., Thera, M. A., Modiano, D., Sirima, S. B., Wilson, M. D., Koram, K. A., Agbenyega, T. & 47 others, Achidi, E., Marsh, K., Reyburn, H., Drakeley, C., Riley, E., Molyneux, M., Jallow, M., Pinder, M., Toure, O. B., Konate, S., Sissoko, S., Bougouma, E. C., Mangano, V. D., Amenga-Etego, L. N., Ghansah, A. K., Hodgson, A. V. O., Wilson, M. D., Ansong, D., Enimil, A., Evans, J., Apinjoh, T. O., Macharia, A., Ndila, C. M., Newton, C., Peshu, N., Uyoga, S., Manjurano, A., Kachala, D., Nyirongo, V., Mead, D., Drury, E., Auburn, S., Campino, S. G., MacInnis, B., Stalker, J., Gray, E., Hubbart, C., Jeffreys, A. E., Rowlands, K., Mendy, A., Craik, R., Fitzpatrick, K., Molloy, S., Hart, L., Hutton, R., Kerasidou, A. & Johnson, K. J., 2015, In : Nature. 526, 7572, p. 253-257 5 p.

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Chloroquine efficacy for Plasmodium vivax malaria treatment in southern Ethiopia

Getachew, S., Ley-Thriemer, K., Auburn, S., Abera, A., Gadisa, E., Aseffa, A., Price, R. & Petros, B., 2015, In : Malaria Journal. 14, 1, p. 1-8 8 p., 525.

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Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination

Noviyanti, R., Farah, C., Utami, R. A. S., Trimarsanto, H., Tirta, Y. K., Trianty, L., Kusuma, A., Sutanto, A., Kosasih, A., Kusriastuti, Hawley, W. A., Laihad, F., Lobo, N., Marfurt, J., Clark, T., Price, R. & Auburn, S., 2015, In : PLoS Neglected Tropical Diseases. 9, 5 1, p. 1-19 19 p., e0003739.

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Genetic determinants of anti-malarial acquired immunity in a large multi-centre study

Shelton, J. M. G., Corran, P., Risley, P., Silva, N., Hubbart, C., Jeffreys, A., Rowlands, K., Craik, R., Cornelius, V., Hensmann, M., Molloy, S., Sepulveda, N., Clark, T. G., Band, G., Clarke, G. M., Spencer, C. C. A., Kerasidou, A., Campino, S., Auburn, S., Tall, A. & 39 others, Ly, A. B., Mercereau-Puijalon, O., Sakuntabhai, A., Djimdé, A., Maiga, B., Touré, O., Doumbo, O. K., Dolo, A., Troye-Blomberg, M., Mangano, V. D., Verra, F., Modiano, D., Bougouma, E., Sirima, S. B., Ibrahim, M., Hussain, A., Eid, N., Elzein, A., Mohammed, H., Elhassan, A., Elhassan, I., Williams, T. N., Ndila, C., Macharia, A., Marsh, K., Manjurano, A., Reyburn, H., Lemnge, M., Ishengoma, D., Carter, R., Karunaweera, N., Fernando, D., Dewasurendra, R., Drakeley, C. J., Riley, E. M., Kwiatkowski, D. P., Rockett, K. A., MalariaGEN Consortium & MalariaGEN Consortium, 2015, In : Malaria Journal. 14, 1, p. 1-18 18 p., 833.

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Targeting vivax malaria in the Asia Pacific: The Asia Pacific Malaria Elimination Network Vivax Working Group

Anstey, N. M., Auburn, S. A., Kevin, B. K., Battle, K. E., Bobogare, A. B., Chancellor, A. C., Chasombat, S. C., Cheng, Q. C., Domingo, G. J., Drakeley, C. J., Drukpa, T. D., Dysoley, L., Espino, F. E., Gething, P. W., Ghimire, P. G., Gosling, R. D., Grewal-Daumerie, P. G. D., Hay, S. I., Howes, R. E., Hwang, J. M. & 26 others, Karim, J. K., Khan, W. A., Kim, J-Y., Ley, B. L., Mannion, K. M., McCarthy, J. M., Keong, W. M., Mueller, M. I., Namgay, R. N., Price, R. N., Qi, G. Q., Rebueno, M. R., Reeder, J. R., Richards, J. R., Sattabongkot-Prachumsri, J. S. P., Shanks, G. D., Sibley, C. H., Surya, A. S., Taleo, G. T., Thang, N. D., Thongpaseuth, V. T., Ley-Thriemer, K., Trimarsanto, H. T., Vestergaard, L. S., Seidelein, L. V. & Whittaker, M. W., 1 Dec 2015, In : Malaria Journal. 14, 1, p. 1-11 11 p., 484.

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Variation in complexity of infection and transmission stability between neighbouring populations of Plasmodium vivax in Southern Ethiopia

Getachew, S., To, S., Trimarsanto, H., Ley-Thriemer, K., Clark, TG., Petros, B., Aseffa, A., Price, R. & Auburn, S., 2015, In : PLoS One. 10, p. 1-15 15 p., e0140780 .

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2014

Genetic diversity and population structure of Plasmodium vivax in Central China

Liu, Y., Auburn, S., Cao, J., Trimarsanto, H., Zhou, H., Gray, K-A., Clark, T., Price, R., Cheng, Q., Huang, R. & Gao, Q., 2014, In : Malaria Journal. 13, 1, p. 1-12 12 p., 262.

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2013
Open Access

Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing

Auburn, S., Marfurt, J., Maslen, G., Campino, S., Ruano-Rubio, V., Manske, M., Machunter, B., Kenangalem, E., Noviyanti, R., Trianty, L., Sebayang, B., Wirjanata, G., Sriprakash, K., Alcock, D., MacInnes, B., Miotto, O., Clark, T., Russell, B., Anstey, N., Nosten, F. & 2 others, Kwiatkowski, D. & Price, R., 2013, In : PLoS One. 8, 1, p. 1-11 11 p., e53160.

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Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia

Takala-Harrison, S., Clark, T., Jacob, C., Cummings, MP., Miotto, O., Dondorp, A., Fukuda, M., Nosten, F., Noedl, H., Imwong, M., Bethell, D., Se, Y., Lon, C., Tyner, SD., Saunders, D., Socheat, D., Ariey, F., Phyo, A. P., Starzengruber, P., Fuehrer, H. & 19 others, Swoboda, P., Stepniewska, K., Flegg, J., Arze, C., Cerqueira, GC., Silva, J., Ricklefs, SM., Porcella, S., Stephens, RM., Adams, M., Kenefic, L., Campino, S., Auburn, S., MacInnes, B., Kwiatkowski, D., Su, X-Z., White, N. J., RINGWALD, P. & Plowe, C., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 1, p. 240-245 6 p.

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Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya

Borrmann, S., Straimer, J., Mwai, L., Abdi, A., Rippert, A., Okombo, J., Muriithi, S., Sasi, P., Kortok, M. M., Lowe, B., Campino, S., Assefa, S., Auburn, S., Manske, M., Maslen, G., Peshu, N., Kwiatkowski, D., Marsh, K., Nzila, A. & Clark, T., 2013, In : Scientific Reports. 3, p. 1-10 10 p., 3318.

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Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

Miotto, O., Almagro-Garcia, J., Manske, M., MacInnis, B., Campino, S., Rockett, K. A., Amaratunga, C., Lim, P., Suon, S., Sreng, S., Anderson, J. M., Duong, S., Nguon, C., Chuor, C. M., Saunders, D., Se, Y., Lon, C., Fukuda, M. M., Amenga-Etego, L., Hodgson, A. V. O. & 42 others, Asoala, V., Imwong, M., Takala-Harrison, S., Nosten, F., Su, X. Z., Ringwald, P., Ariey, F., Dolecek, C., Hien, T. T., Boni, M. F., Thai, C. Q., Amambua-Ngwa, A., Conway, D. J., Djimdé, A. A., Doumbo, O. K., Zongo, I., Ouedraogo, J. B., Alcock, D., Drury, E., Auburn, S., Koch, O., Sanders, M., Hubbart, C., Maslen, G., Ruano-Rubio, V., Jyothi, D., Miles, A., O'Brien, J., Gamble, C., Oyola, S. O., Rayner, J. C., Newbold, C. I., Berriman, M., Spencer, C. C. A., McVean, G., Day, N. P., White, N. J., Bethell, D., Dondorp, A. M., Plowe, C. V., Fairhurst, R. M. & Kwiatkowski, D. P., 2013, In : Nature Genetics. 45, 6, p. 648-655 8 p.

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Plasmodium vivax Population Structure and Transmission Dynamics in Sabah Malaysia

Abdullah, N., Barber, B., William, T., Norahmad, N., Satsu, U., Muniandy, P., Ismail, Z., Grigg, M., Jelip, J., Piera, K., Von Seidlein, L., Yeo, T., Anstey, N., Price, R. & Auburn, S., 2013, In : PLoS One. 8, 12, p. 1-10 10 p., e82553.

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Review of key knowledge gaps in glucose-6-phosphate dehydrogenase deficiency detection with regard to the safe clinical deployment of 8-aminoquinoline treatment regimens: A workshop report

Von Seidlein, L., Auburn, S., Espino, F., Shanks, D., Cheng, Q., McCarthy, J., Baird, J. K., Moyes, C., Howes, R., Menard, D., Bancone, Winasti-Satuahraha, A., Vestergaard, L., Green, J., Domingo, G., Yeung, S. & Price, R., 2013, In : Malaria Journal. 12, 1, p. 112-1-112-12 12 p.

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2012

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

Manske, M., Miotto, O., Campino, S., Auburn, S., Almagro-Gracia, J., Maslen, G., O'Brien, J., Djimde, A., Doumbo, O., Zongo, I., Ouedraogo, J., Michon, P., Mueller, I., Siba, P., Nzila, A., Borrman, S., Kiara, S., Marsh, K., Jiang, H., Su, X-Z. & 36 others, Amaratunga, C., Fairhurst, R., Socheat, D., Nosten, F., Imwong, M., White, N. J., Sanders, M., Anastasi, E., Alcock, D., Drury, E., Oyola, S., Quail, M., Turner, D., Ruano-Rubio, V., Jyothi, D., Amenga-Etego, L., Hubbart, C., Jeffreys, A., Rowlands, K., Sutherland, C., Roper, C., Mangano, V., Modiano, D., Tan, J., Ferdig, M., Amambua-Ngwa, A., Conway, D., Takala-Harrison, S., Plowe, C., Rayner, J., Rockett, K., Clark, T., Newbold, C., Berriman, M., MacInnis, B. & Kwiatkowski, D., 19 Jul 2012, In : Nature. 487, p. 375-379 5 p.

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Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data

Auburn, S., Campino, S., Miotto, O., Djimde, A., Zongo, I., Manske, M., Maslen, G., Mangano, V., Alcock, D., MacInnis, B., Rockett, K., Clark, T., Doumbo, O., Ouedraogo, J. & Kwiatkowski, D., 2012, In : PLoS One. 7, 2, p. 1-6 6 p., e32891.

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Phenotypic and genotypic characterisation of drug-resistant Plasmodium vivax

Price, R., Auburn, S., Marfurt, J. & Cheng, Q., 2012, In : Trends in Parasitology. 28, 11, p. 522-529 8 p.

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