Dissecting malaria biology and epidemiology using population genetics and genomics

Sarah Auburn, Alyssa E. Barry

    Research output: Contribution to journalReview articleResearchpeer-review

    Abstract

    Molecular approaches have an increasingly recognized utility in surveillance of malaria parasite populations, not only in defining prevalence and incidence with higher sensitivity than traditional methods, but also in monitoring local and regional parasite transmission patterns. In this review, we provide an overview of population genetic and genomic studies of human-infecting Plasmodium species, highlighting recent advances in the field. In accordance with the renewed impetus for malaria eradication, many studies are now using genetic and genomic epidemiology to support local evidence-based intervention strategies. Microsatellite genotyping remains a popular approach for both Plasmodium falciparum and Plasmodium vivax. However, with the increasing availability of whole genome sequencing data enabling effective single nucleotide polymorphism-based panels tailored to a given study question and setting, this approach is gaining popularity. The availability of new reference genomes for Plasmodium malariae and Plasmodium ovale should see a surge in similar molecular studies on these currently neglected species. Genomic studies are revealing new insights into important adaptive mechanisms of the parasite including antimalarial drug resistance. The advent of new methodologies such as selective whole genome amplification for dealing with extensive human DNA in low density field isolates should see genome-wide approaches becoming routine for parasite surveillance once the economic costs outweigh the current cost benefits of targeted approaches.

    Original languageEnglish
    Pages (from-to)77-85
    Number of pages9
    JournalInternational Journal for Parasitology
    Volume47
    Issue number2-3
    DOIs
    Publication statusPublished - Feb 2017

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    Metagenomics
    Population Genetics
    Malaria
    Parasites
    Epidemiology
    Genome
    Plasmodium ovale
    Plasmodium malariae
    Plasmodium vivax
    Plasmodium
    Molecular Epidemiology
    Antimalarials
    Plasmodium falciparum
    Drug Resistance
    Microsatellite Repeats
    Cost-Benefit Analysis
    Single Nucleotide Polymorphism
    Economics
    Costs and Cost Analysis
    DNA

    Cite this

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    title = "Dissecting malaria biology and epidemiology using population genetics and genomics",
    abstract = "Molecular approaches have an increasingly recognized utility in surveillance of malaria parasite populations, not only in defining prevalence and incidence with higher sensitivity than traditional methods, but also in monitoring local and regional parasite transmission patterns. In this review, we provide an overview of population genetic and genomic studies of human-infecting Plasmodium species, highlighting recent advances in the field. In accordance with the renewed impetus for malaria eradication, many studies are now using genetic and genomic epidemiology to support local evidence-based intervention strategies. Microsatellite genotyping remains a popular approach for both Plasmodium falciparum and Plasmodium vivax. However, with the increasing availability of whole genome sequencing data enabling effective single nucleotide polymorphism-based panels tailored to a given study question and setting, this approach is gaining popularity. The availability of new reference genomes for Plasmodium malariae and Plasmodium ovale should see a surge in similar molecular studies on these currently neglected species. Genomic studies are revealing new insights into important adaptive mechanisms of the parasite including antimalarial drug resistance. The advent of new methodologies such as selective whole genome amplification for dealing with extensive human DNA in low density field isolates should see genome-wide approaches becoming routine for parasite surveillance once the economic costs outweigh the current cost benefits of targeted approaches.",
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    Dissecting malaria biology and epidemiology using population genetics and genomics. / Auburn, Sarah; Barry, Alyssa E.

    In: International Journal for Parasitology, Vol. 47, No. 2-3, 02.2017, p. 77-85.

    Research output: Contribution to journalReview articleResearchpeer-review

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