SnoopCGH

Software for visualizing comparative genomic hybridization data

Jacob Almagro-Gracia, Magnus Manske, Celine Carret, Susana Campino, Sarah Auburn, Bronwyn MacInnis, Gareth Maslen, Arnab Pain, Christopher Newbold, Dominic Kwiatkowski, Taane Clark

Research output: Contribution to journalArticleResearchpeer-review

Abstract

Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data.
Original languageEnglish
Pages (from-to)2732-2733
Number of pages2
JournalBioinformatics
Volume25
Issue number20
Publication statusPublished - 2009
Externally publishedYes

Fingerprint

Comparative Genomics
Comparative Genomic Hybridization
Software
Genomic Structural Variation
Technology
Visualization
Summarization
Software Tools
Deletion
Insertion
Genomics
Data analysis
Output

Cite this

Almagro-Gracia, J., Manske, M., Carret, C., Campino, S., Auburn, S., MacInnis, B., ... Clark, T. (2009). SnoopCGH: Software for visualizing comparative genomic hybridization data. Bioinformatics, 25(20), 2732-2733.
Almagro-Gracia, Jacob ; Manske, Magnus ; Carret, Celine ; Campino, Susana ; Auburn, Sarah ; MacInnis, Bronwyn ; Maslen, Gareth ; Pain, Arnab ; Newbold, Christopher ; Kwiatkowski, Dominic ; Clark, Taane. / SnoopCGH : Software for visualizing comparative genomic hybridization data. In: Bioinformatics. 2009 ; Vol. 25, No. 20. pp. 2732-2733.
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Almagro-Gracia, J, Manske, M, Carret, C, Campino, S, Auburn, S, MacInnis, B, Maslen, G, Pain, A, Newbold, C, Kwiatkowski, D & Clark, T 2009, 'SnoopCGH: Software for visualizing comparative genomic hybridization data', Bioinformatics, vol. 25, no. 20, pp. 2732-2733.

SnoopCGH : Software for visualizing comparative genomic hybridization data. / Almagro-Gracia, Jacob; Manske, Magnus; Carret, Celine; Campino, Susana; Auburn, Sarah; MacInnis, Bronwyn; Maslen, Gareth; Pain, Arnab; Newbold, Christopher; Kwiatkowski, Dominic; Clark, Taane.

In: Bioinformatics, Vol. 25, No. 20, 2009, p. 2732-2733.

Research output: Contribution to journalArticleResearchpeer-review

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T2 - Software for visualizing comparative genomic hybridization data

AU - Almagro-Gracia, Jacob

AU - Manske, Magnus

AU - Carret, Celine

AU - Campino, Susana

AU - Auburn, Sarah

AU - MacInnis, Bronwyn

AU - Maslen, Gareth

AU - Pain, Arnab

AU - Newbold, Christopher

AU - Kwiatkowski, Dominic

AU - Clark, Taane

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AB - Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data.

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VL - 25

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JF - Bioinformatics

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Almagro-Gracia J, Manske M, Carret C, Campino S, Auburn S, MacInnis B et al. SnoopCGH: Software for visualizing comparative genomic hybridization data. Bioinformatics. 2009;25(20):2732-2733.